+1 for Rogue. They have good food (not great, but definitely edible) and a very large selection of beer from both their own brewery and their subsidiaries (Eugene City, Issaquah, etc...). They also tend to have several other craft brews around. Last time they had a couple from Victory and Ninkasi. All-in-all, I think they had ~30 beers on tap. A good place with nice people working there.
I cannot say enough nice things about my favorite beer spot .... Beer Revolution. They have a good selection, great staff, and fair prices. I live in the East Bay, so I tend to stay on this side of the bridge (or tunnel). I love how you can try a beer, and then buy a couple bottles to take home with you if you like it.